- recipe chewbbaca
A complete suite for gene-by-gene schema creation and strain identification.
- Homepage:
- License:
GPL3 / GPL-3.0-only
- Recipe:
- Links:
chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.
- package chewbbaca¶
-
- Versions:
3.2.0-0
,3.1.2-0
,3.1.1-0
,3.1.0-0
,3.0.0-0
,2.8.5-1
,2.8.5-0
,2.8.4-0
,2.7.0-0
,3.2.0-0
,3.1.2-0
,3.1.1-0
,3.1.0-0
,3.0.0-0
,2.8.5-1
,2.8.5-0
,2.8.4-0
,2.7.0-0
,2.6.0-0
,2.5.6-0
,2.5.5-0
,2.5.4-0
,2.5.2-0
,2.5.1-0
,2.1.0-0
,2.0.17.2-0
,2.0.17.1-0
,2.0.16-0
,2.0.15-0
,2.0.12-2
,2.0.8-2
,2.0.8-0
,2.0.6-0
,1.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install chewbbaca
and update with:
conda update chewbbaca
or use the docker container:
docker pull quay.io/biocontainers/chewbbaca:<tag>
(see chewbbaca/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/chewbbaca/README.html)