recipe chewbbaca

A complete suite for gene-by-gene schema creation and strain identification.

Homepage

https://github.com/B-UMMI/chewBBACA

License

GPL3 / GPL-3.0-only

Recipe

/chewbbaca/meta.yaml

chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.

package chewbbaca

(downloads) docker_chewbbaca

Versions
2.5.6-02.5.5-02.5.4-02.5.2-02.5.1-02.1.0-02.0.17.2-02.0.17.1-02.0.16-0

2.5.6-02.5.5-02.5.4-02.5.2-02.5.1-02.1.0-02.0.17.2-02.0.17.1-02.0.16-02.0.15-02.0.12-22.0.8-22.0.8-02.0.6-01.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install chewbbaca

and update with:

conda update chewbbaca

or use the docker container:

docker pull quay.io/biocontainers/chewbbaca:<tag>

(see chewbbaca/tags for valid values for <tag>)