chewbbaca

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A complete suite for gene-by-gene schema creation and strain identification

Home https://github.com/B-UMMI/chewBBACA
Versions 1.0, 2.0.6, 2.0.8
License GPL-3.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/chewbbaca

chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install chewbbaca

and update with:

conda update chewbbaca

docker

A Docker container is available at https://quay.io/repository/biocontainers/chewbbaca.