recipe chewbbaca

A complete suite for gene-by-gene schema creation and strain identification.

Homepage:

https://github.com/B-UMMI/chewBBACA

License:

GPL3 / GPL-3.0-only

Recipe:

/chewbbaca/meta.yaml

Links:

doi: 10.1099/mgen.0.000166

chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.

package chewbbaca

(downloads) docker_chewbbaca

Versions:
3.2.0-03.1.2-03.1.1-03.1.0-03.0.0-02.8.5-12.8.5-02.8.4-02.7.0-0

3.2.0-03.1.2-03.1.1-03.1.0-03.0.0-02.8.5-12.8.5-02.8.4-02.7.0-02.6.0-02.5.6-02.5.5-02.5.4-02.5.2-02.5.1-02.1.0-02.0.17.2-02.0.17.1-02.0.16-02.0.15-02.0.12-22.0.8-22.0.8-02.0.6-01.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install chewbbaca

and update with:

conda update chewbbaca

or use the docker container:

docker pull quay.io/biocontainers/chewbbaca:<tag>

(see chewbbaca/tags for valid values for <tag>)

Download stats