- recipe chexmix
ChExMix aims to characterize protein-DNA binding subtypes in ChIP-exo experiments. ChExMix assumes that different regulatory complexes will result in different protein-DNA crosslinking signatures in ChIP-exo data, and thus analysis of ChIP-exo sequencing tag patterns should enable detection of multiple protein-DNA binding modes for a given regulatory protein. ChExMix uses a mixture modeling framework to probabilistically model the genomic locations and subtype membership of protein-DNA binding events, leveraging both ChIP-exo tag enrichment patterns and DNA sequence information. In doing so, ChExMix offers a more principled and robust approach to characterizing binding subtypes than simply clustering binding events using motif information.
- Homepage:
- License:
MIT
- Recipe:
- package chexmix¶
-
- Versions:
0.52-0
,0.51-0
,0.45-0
,0.5-1
,0.5-0
,0.4-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install chexmix
and update with:
conda update chexmix
or use the docker container:
docker pull quay.io/biocontainers/chexmix:<tag>
(see chexmix/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/chexmix/README.html)