recipe chia-rep

A package for measuring reproducibility of ChIA-PET data.

Homepage:

https://github.com/c0ver/chia_rep

License:

MIT / MIT

Recipe:

/chia-rep/meta.yaml

package chia-rep

versions:

3.1.1-3,  3.1.1-2,  3.1.1-1,  3.1.1-0,  3.1.0-0,  2.2.0-0,  2.1.0-0,  1.0.0-0

depends click:

>=7.0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends numpy:

>=1.17.0

depends pybedgraph:

>=0.5.40

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

>=1.3.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install chia-rep

and update with::

   mamba update chia-rep

To create a new environment, run:

mamba create --name myenvname chia-rep

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/chia-rep:<tag>

(see `chia-rep/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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