recipe chira

An integrated framework for annotation and visualization of chimeric reads.

Homepage:

https://github.com/pavanvidem/chira/

License:

GNU GENERAL PUBLIC LICENSE Version 3

Recipe:

/chira/meta.yaml

Links:

usegalaxy-eu: chira_quantify

package chira

Versions:

1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.2-0,  1.4.0-0,  1.3.7-1,  1.3.7-0,  1.3.6-0,  1.3.5-0, 

1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.2-0,  1.4.0-0,  1.3.7-1,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.1-1,  1.3.1-0,  1.2.0-0,  1.1.5-0,  1.1.4-0,  1.1.2-0,  1.1.1-0,  1.0.4-0,  1.0.3-0,  1.0.2-2,  1.0.2-1,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends:

• bcbio-gff >=0.6.6

• bedtools >=2.29.2

• biopython >=1.76

• blockbuster >=0.0.1.1

• bwa >=0.7.17

• clan >=0.05

• coreutils >=8.31

• intarna >=3.2.0

• pysam >=0.15.3

• python >3

• samtools >=1.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install chira

and update with:

conda update chira

or use the docker container:

docker pull quay.io/biocontainers/chira:<tag>

(see chira/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/chira/README.html)