recipe circexplorer2

Circular RNA analysis toolkits

Homepage:

https://github.com/YangLab/CIRCexplorer2

License:

MIT License

Recipe:

/circexplorer2/meta.yaml

package circexplorer2

versions:

2.3.8-2,  2.3.8-1,  2.3.8-0,  2.3.6-0,  2.3.5-0,  2.3.3-2,  2.3.3-0,  2.3.2-0,  2.3.1-0, 

2.3.8-2,  2.3.8-1,  2.3.8-0,  2.3.6-0,  2.3.5-0,  2.3.3-2,  2.3.3-0,  2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.7-0,  2.2.6-0,  2.2.5-1,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.1-0

depends bowtie:

1.2.3.*

depends bowtie2:

2.3.5.1.*

depends cufflinks:

2.2.1.*

depends docopt:

depends pybedtools:

depends pysam:

>=0.8.4

depends python:

depends requests:

depends scipy:

depends tophat:

2.1.1.*

depends ucsc-genepredtogtf:

depends ucsc-gtftogenepred:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install circexplorer2

and update with::

   mamba update circexplorer2

To create a new environment, run:

mamba create --name myenvname circexplorer2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/circexplorer2:<tag>

(see `circexplorer2/tags`_ for valid values for ``<tag>``)

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