recipe circexplorer2

Circular RNA analysis toolkits

Homepage:

https://github.com/YangLab/CIRCexplorer2

License:

MIT License

Recipe:

/circexplorer2/meta.yaml

package circexplorer2

Versions:

2.3.8-2,  2.3.8-1,  2.3.8-0,  2.3.6-0,  2.3.5-0,  2.3.3-2,  2.3.3-0,  2.3.2-0,  2.3.1-0, 

2.3.8-2,  2.3.8-1,  2.3.8-0,  2.3.6-0,  2.3.5-0,  2.3.3-2,  2.3.3-0,  2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.7-0,  2.2.6-0,  2.2.5-1,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.1-0

Depends:

• bowtie 1.2.3.*

• bowtie2 2.3.5.1.*

• cufflinks 2.2.1.*

• docopt

• pybedtools

• pysam >=0.8.4

• python

• requests

• scipy

• tophat 2.1.1.*

• ucsc-genepredtogtf

• ucsc-gtftogenepred

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install circexplorer2

and update with:

conda update circexplorer2

or use the docker container:

docker pull quay.io/biocontainers/circexplorer2:<tag>

(see circexplorer2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/circexplorer2/README.html)