recipe circos-tools

circos-tools provides several utility add-on scripts, such as for bundling links

Homepage:

http://circos.ca

License:

GPL2 / GNU General Public License v2 (GPLv2)

Recipe:

/circos-tools/meta.yaml

package circos-tools

versions:

0.23-3,  0.23-2,  0.23-1,  0.23-0

depends perl:

depends perl-bioperl:

>=1.7

depends perl-carp:

depends perl-config-general:

depends perl-data-dumper:

depends perl-file-path:

depends perl-findbin:

depends perl-getopt-long:

depends perl-graphics-colorobject:

depends perl-list-moreutils:

depends perl-math-random:

depends perl-math-round:

depends perl-math-vecstat:

depends perl-memoize:

depends perl-pod-usage:

depends perl-regexp-common:

depends perl-set-intspan:

depends perl-statistics-descriptive:

depends perl-time-hires:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install circos-tools

and update with::

   mamba update circos-tools

To create a new environment, run:

mamba create --name myenvname circos-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/circos-tools:<tag>

(see `circos-tools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/circos-tools/README.html)