recipe circrna_finder

Scripts required for running the pipeline to find circular RNAs from RNA-seq data

Homepage:

https://github.com/orzechoj/circRNA_finder

License:

MIT

Recipe:

/circrna_finder/meta.yaml

package circrna_finder

versions:

1.2-1,  1.2-0

depends coreutils:

depends perl:

>=5.32.1,<6.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install circrna_finder

and update with::

   mamba update circrna_finder

To create a new environment, run:

mamba create --name myenvname circrna_finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/circrna_finder:<tag>

(see `circrna_finder/tags`_ for valid values for ``<tag>``)

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