recipe circulocov

CirculoCov is a Python tool designed for circular-aware coverage analysis of draft genomes

Homepage:

https://github.com/erinyoung/CirculoCov

Documentation:

https://github.com/erinyoung/CirculoCov/blob/main/README.md

License:

GPL / GPL-3.0

Recipe:

/circulocov/meta.yaml

package circulocov

(downloads) docker_circulocov

versions:

0.1.20240104-0

depends biopython:

>=1.58

depends matplotlib-base:

>=3.8.2

depends minimap2:

>=2.25

depends numpy:

>=1.26.2

depends pandas:

>=2.1.4

depends pycirclize:

>=1.3.0

depends pysam:

>=0.22.0

depends python:

>=3.8,<4.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install circulocov

and update with::

   mamba update circulocov

To create a new environment, run:

mamba create --name myenvname circulocov

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/circulocov:<tag>

(see `circulocov/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/circulocov/README.html)