recipe ciri-full

Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features.

Homepage:

https://ciri-cookbook.readthedocs.io/en/latest/CIRI-full.html

Developer docs:

https://github.com/bioinfo-biols/CIRI-full

License:

unknown

Recipe:

/ciri-full/meta.yaml

Links:

doi: 10.1186/s13073-019-0614-1

package ciri-full

(downloads) docker_ciri-full

versions:

2.1.2-0

depends bwa:

depends openjdk:

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ciri-full

and update with::

   mamba update ciri-full

To create a new environment, run:

mamba create --name myenvname ciri-full

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ciri-full:<tag>

(see `ciri-full/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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