recipe cirtap

A CLI to handle PATRIC data from the FTP

Homepage:

https://github.com/MGXlab/cirtap/

Developer docs:

https://github.com/MGXlab/cirtap

License:

MIT

Recipe:

/cirtap/meta.yaml

package cirtap

(downloads) docker_cirtap

versions:

0.3.1-0,  0.3.0-0,  0.2.1-0

depends biopython:

depends click:

>=8.0

depends ete3:

depends pandas:

>=1.1.4

depends python:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cirtap

and update with::

   mamba update cirtap

To create a new environment, run:

mamba create --name myenvname cirtap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cirtap:<tag>

(see `cirtap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cirtap/README.html)