recipe cistrome_beta

Binding and Expression Target Analysis of ChIP-seq TF with differential gene expression

Homepage:

https://github.com/hanfeisun/BETA

License:

This code is free software; you can redistribute it and/or modify it.

Recipe:

/cistrome_beta/meta.yaml

package cistrome_beta

(downloads) docker_cistrome_beta

versions:

1.0.7-5,  1.0.7-4,  1.0.7-3,  1.0.7-2,  1.0.7-1,  1.0.7-0

depends libgcc-ng:

>=10.3.0

depends numpy:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends r-base:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cistrome_beta

and update with::

   mamba update cistrome_beta

To create a new environment, run:

mamba create --name myenvname cistrome_beta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cistrome_beta:<tag>

(see `cistrome_beta/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cistrome_beta/README.html)