recipe cite-seq-count

A python package to map reads from CITE-seq or hashing data for single cell experiments

Homepage:

https://hoohm.github.io/CITE-seq-Count/

Developer docs:

https://github.com/Hoohm/CITE-seq-Count/

License:

MIT / MIT

Recipe:

/cite-seq-count/meta.yaml

Links:

biotools: CITE-seq-Count, doi: 10.5281/zenodo.2590196

package cite-seq-count

Versions:

1.4.4-0

Depends:

• multiprocess >=0.70.6.1

• pandas >=0.23.4

• pybktree 1.1

• pytest

• pytest-dependency

• python >=3.6

• python-levenshtein >=0.12.0

• scipy >=1.1.0

• umi_tools 1.0.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cite-seq-count

and update with:

conda update cite-seq-count

or use the docker container:

docker pull quay.io/biocontainers/cite-seq-count:<tag>

(see cite-seq-count/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cite-seq-count/README.html)