recipe clair3-illumina

Clair3 with libraries to support variant calling using Illumina short-reads. Version in sync with Clair3.

Homepage:

https://github.com/HKU-BAL/Clair3

License:

BSD / BSD-3-Clause

Recipe:

/clair3-illumina/meta.yaml

Links:

doi: 10.1038/s43588-022-00387-x

package clair3-illumina

versions:

1.0.10-0,  1.0.9-1,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0, 

1.0.10-0,  1.0.9-1,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-0,  0.1.5-1,  0.1.5-0

depends clair3:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clair3-illumina

and update with::

   mamba update clair3-illumina

To create a new environment, run:

mamba create --name myenvname clair3-illumina

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clair3-illumina:<tag>

(see `clair3-illumina/tags`_ for valid values for ``<tag>``)

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