recipe clair3-trio

Clair3-Trio is a variants caller tailored for family trios from nanopore long-reads. Clair3-Trio employs a Trio-to-Trio deep neural network model that allows it to input all trio’s sequencing information and output all trio’s predicted variants within a single model, to perform far better variant calling. We also present MCVLoss, the first loss function that can improve variants calling in trios by leveraging the explicitly encoding of the priors of the Mendelian inheritance in trios. Clair3-Trio showed comprehensive improvement in experiments. It predicted much fewer Mendelian inheritance violation variations than current state-of-the-art methods.

Homepage:

https://github.com/HKU-BAL/Clair3-Trio

License:

BSD-3-Clause

Recipe:

/clair3-trio/meta.yaml

package clair3-trio

(downloads) docker_clair3-trio

Versions:

0.3-10.3-00.2-00.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clair3-trio

and update with:

conda update clair3-trio

or use the docker container:

docker pull quay.io/biocontainers/clair3-trio:<tag>

(see clair3-trio/tags for valid values for <tag>)

Download stats