recipe clair3

Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Homepage:

https://github.com/HKU-BAL/Clair3

License:

BSD-3-Clause

Recipe:

/clair3/meta.yaml

package clair3

(downloads) docker_clair3

Versions:
0.1.12-60.1.12-50.1.12-40.1.12-20.1.12-10.1.12-00.1.11-60.1.11-50.1.11-4

0.1.12-60.1.12-50.1.12-40.1.12-20.1.12-10.1.12-00.1.11-60.1.11-50.1.11-40.1.11-30.1.11-20.1.11-10.1.11-00.1.10-00.1.9-00.1.8-00.1.7-00.1.6-00.1.5-00.1.4.2-00.1.4.1-00.1.4-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clair3

and update with:

conda update clair3

or use the docker container:

docker pull quay.io/biocontainers/clair3:<tag>

(see clair3/tags for valid values for <tag>)

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