Package Recipe 'clame'

recipe clame

CLAME is a binning software for metagenomic reads. It immplements a fm-index search algorithm for nucleotide sequence alignment. Then it uses strongly connected component strategy to bin sequences with similar DNA composition.

Homepage:: https://github.com/andvides/CLAME
License:: GPL / GPL-3.0
Recipe:: /clame/meta.yaml
Links:: doi: 10.1186/s12864-018-5191-y

package clame¶

Versions:

1.0-1, 1.0-0

Depends:

_openmp_mutex >=4.5
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0

Required By:

datma

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clame

and update with:

conda update clame

or use the docker container:

docker pull quay.io/biocontainers/clame:<tag>

(see clame/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clame/README.html)