recipe clame

CLAME is a binning software for metagenomic reads. It immplements a fm-index search algorithm for nucleotide sequence alignment. Then it uses strongly connected component strategy to bin sequences with similar DNA composition.

Homepage

https://github.com/andvides/CLAME

License

GPL / GPL-3.0

Recipe

/clame/meta.yaml

Links

doi: 10.1186/s12864-018-5191-y

package clame

Versions

1.0-1,  1.0-0

Depends

• _openmp_mutex >=4.5

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

Required By

• datma

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install clame

and update with:

conda update clame

or use the docker container:

docker pull quay.io/biocontainers/clame:<tag>

(see clame/tags for valid values for <tag>)

Link to this page

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