recipe clearcnv

CNV calling package

Homepage:

https://github.com/bihealth/clear-cnv

License:

MIT / MIT

Recipe:

/clearcnv/meta.yaml

package clearcnv

versions:

0.306-0,  0.305-1,  0.305-0

depends attrs:

depends bedops:

depends bedtools:

depends cattrs:

depends dash:

1.21.0.*

depends dash-bootstrap-components:

depends dash-core-components:

depends dash-html-components:

depends dash-renderer:

depends dash-table:

depends fastcluster:

depends flask:

depends flask-caching:

depends hmmlearn:

depends logzero:

depends matplotlib-base:

depends numpy:

depends pandas:

depends plotly:

depends python:

>=3.7

depends pyyaml:

depends samtools:

depends scikit-learn:

depends scipy:

depends seaborn:

depends snakemake-minimal:

depends tqdm:

depends werkzeug:

2.0.0.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clearcnv

and update with::

   mamba update clearcnv

To create a new environment, run:

mamba create --name myenvname clearcnv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clearcnv:<tag>

(see `clearcnv/tags`_ for valid values for ``<tag>``)

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Link to this page

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