recipe clearcnv

CNV calling package

Homepage:

https://github.com/bihealth/clear-cnv

License:

MIT / MIT

Recipe:

/clearcnv/meta.yaml

package clearcnv

Versions:

0.306-0,  0.305-1,  0.305-0

Depends:

• attrs

• bedops

• bedtools

• cattrs

• dash 1.21.0.*

• dash-bootstrap-components

• dash-core-components

• dash-html-components

• dash-renderer

• dash-table

• fastcluster

• flask

• flask-caching

• hmmlearn

• logzero

• matplotlib-base

• numpy

• pandas

• plotly

• python >=3.7

• pyyaml

• samtools

• scikit-learn

• scipy

• seaborn

• snakemake-minimal

• tqdm

• werkzeug 2.0.0.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clearcnv

and update with:

conda update clearcnv

or use the docker container:

docker pull quay.io/biocontainers/clearcnv:<tag>

(see clearcnv/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clearcnv/README.html)