- recipe clinker
Clinker is a bioinformatics pipeline that generates a superTranscriptome from popular fusion finder outputs (JAFFA, tophatFusion, SOAP, deFUSE, Pizzly, etc), that can be then be either viewed in genome viewers such as IGV or through the included plotting feature developed with GViz.
- Homepage:
- License:
MIT
- Recipe:
- package clinker¶
-
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install clinker
and update with:
conda update clinker
or use the docker container:
docker pull quay.io/biocontainers/clinker:<tag>
(see clinker/tags for valid values for
<tag>
)
Notes¶
Wrapper script provided to indicate clinker is a bpipe pipeline, provide example command from wiki, and also a passthrough option.
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/clinker/README.html)