recipe clipcontext

Extract CLIP-seq binding regions with both genomic and transcript context

Homepage:

https://github.com/BackofenLab/CLIPcontext

License:

MIT

Recipe:

/clipcontext/meta.yaml

package clipcontext

Versions:

0.7-0,  0.6-0,  0.3-0,  0.2-0,  0.1-0

Depends:

• bedtools 2.29.0.*

• markdown >=3.2.1

• matplotlib-base >=3.1.3

• pandas >=1.0.3

• python >=3.6

• seaborn >=0.10.0

• ucsc-twobitinfo

• ucsc-twobittofa

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clipcontext

and update with:

conda update clipcontext

or use the docker container:

docker pull quay.io/biocontainers/clipcontext:<tag>

(see clipcontext/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clipcontext/README.html)