recipe clonalframeml

Efficient inferencing of recombination in bacterial genomes

Homepage:

https://github.com/xavierdidelot/ClonalFrameML

Documentation:

https://github.com/xavierdidelot/clonalframeml/wiki

License:

GPL3 / GPL-3.0-or-later

Recipe:

/clonalframeml/meta.yaml

package clonalframeml

(downloads) docker_clonalframeml

versions:
1.13-1,  1.13-0,  1.12-4,  1.12-3,  1.12-2,  1.12-1,  1.12-0,  1.11-7,  1.11-6, 

1.13-1,  1.13-0,  1.12-4,  1.12-3,  1.12-2,  1.12-1,  1.12-0,  1.11-7,  1.11-6,  1.11-5,  1.11-4,  1.11-3,  1.11-2,  1.11-1,  1.11-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clonalframeml

and update with::

   mamba update clonalframeml

To create a new environment, run:

mamba create --name myenvname clonalframeml

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clonalframeml:<tag>

(see `clonalframeml/tags`_ for valid values for ``<tag>``)

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Link to this page

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