recipe cluster_vcf_records

Package to cluster VCF records. For use by gramtools and minos

Homepage:

https://github.com/iqbal-lab-org/cluster_vcf_records

License:

MIT / MIT

Recipe:

/cluster_vcf_records/meta.yaml

package cluster_vcf_records

versions:

0.13.3-0,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.4-1,  0.12.4-0

depends bitarray:

depends pyfastaq:

>=3.14.0

depends pysam:

depends python:

>=3.6

depends vcflib:

depends vt:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cluster_vcf_records

and update with::

   mamba update cluster_vcf_records

To create a new environment, run:

mamba create --name myenvname cluster_vcf_records

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cluster_vcf_records:<tag>

(see `cluster_vcf_records/tags`_ for valid values for ``<tag>``)

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