recipe clusterfunk

Miscellaneous clustering manipulation tools for phylogenetic trees

Homepage:

https://github.com/cov-ert/clusterfunk

License:

MIT / MIT

Recipe:

/clusterfunk/meta.yaml

package clusterfunk

versions:

0.0.2-0

depends biopython:

>=1.70

depends chardet:

>=3.0.4

depends dendropy:

>=4.4.0

depends python:

depends scipy:

>=1.4.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clusterfunk

and update with::

   mamba update clusterfunk

To create a new environment, run:

mamba create --name myenvname clusterfunk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clusterfunk:<tag>

(see `clusterfunk/tags`_ for valid values for ``<tag>``)

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Link to this page

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