recipe cmappy

Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as well as other Connectivity Map (Broad Institute) data/tools



BSD / BSD 3-clause



package cmappy

(downloads) docker_cmappy



depends h5py:


depends libgcc-ng:


depends libstdcxx-ng:


depends numpy:


depends pandas:


depends python:


depends python_abi:

3.10.* *_cp310

depends requests:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cmappy

and update with::

   mamba update cmappy

To create a new environment, run:

mamba create --name myenvname cmappy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `cmappy/tags`_ for valid values for ``<tag>``)

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