recipe cmsip

A package for detecting differential 5hmC regions from CMS-IP sequencing data.

Homepage:

https://github.com/lijinbio/cmsip

License:

MIT / MIT

Recipe:

/cmsip/meta.yaml

package cmsip

Versions:

0.0.3.0-0,  0.0.2.9-0,  0.0.2.8-1,  0.0.2.8-0,  0.0.2.6-0,  0.0.2.3-0,  0.0.2.1-1,  0.0.2.1-0,  0.0.2.0-0, 

0.0.3.0-0,  0.0.2.9-0,  0.0.2.8-1,  0.0.2.8-0,  0.0.2.6-0,  0.0.2.3-0,  0.0.2.1-1,  0.0.2.1-0,  0.0.2.0-0,  0.0.1.8-0,  0.0.1.7-0,  0.0.1.4-1,  0.0.1.4-0,  0.0.1.3-0,  0.0.1.2-0,  0.0.1.1.9-0,  0.0.1.1.1-0,  0.0.0.9-0,  0.0.0.6-0,  0.0.0.5-0

Depends:

• bedtools

• bioconductor-deseq2

• bioconductor-genefilter

• gawk

• matplotlib-base

• moabs

• python >=3

• pyyaml

• r-base

• r-desctools

• ucsc-fetchchromsizes

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cmsip

and update with:

conda update cmsip

or use the docker container:

docker pull quay.io/biocontainers/cmsip:<tag>

(see cmsip/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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