recipe cnvpytor

Python extension of CNVnator

Homepage:

https://github.com/abyzovlab/CNVpytor

License:

MIT / MIT

Recipe:

/cnvpytor/meta.yaml

package cnvpytor

versions:

1.3.1-1,  1.3.1-0,  1.2.1-0,  1.0-2,  1.0-1,  1.0-0,  1.0b3-1,  1.0b3-0

depends chardet:

depends h5py:

>=2.9

depends matplotlib-base:

>=2.2

depends numpy:

>=1.16

depends pathlib:

>=1.0

depends pysam:

>=0.15

depends python:

>=3.6

depends requests:

>=2.0

depends scipy:

>=1.1

depends xlsxwriter:

>=1.3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cnvpytor

and update with::

   mamba update cnvpytor

To create a new environment, run:

mamba create --name myenvname cnvpytor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cnvpytor:<tag>

(see `cnvpytor/tags`_ for valid values for ``<tag>``)

Notes

The package comes with downloaded reference data, such that `cnvpytor -download` can be omitted.

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cnvpytor/README.html)