recipe cobra-meta

COBRA is a tool to get higher quality viral genomes assembled from metagenomes.

Homepage:

https://github.com/linxingchen/cobra

License:

MIT

Recipe:

/cobra-meta/meta.yaml

Links:

doi: 10.1101/2023.05.30.542503

package cobra-meta

(downloads) docker_cobra-meta

versions:

1.2.3-0,  1.2.2-0

depends biopython:

depends blast:

>=2.14.0,<3.0.0

depends numpy:

depends pysam:

depends python:

>=3.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cobra-meta

and update with::

   mamba update cobra-meta

To create a new environment, run:

mamba create --name myenvname cobra-meta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cobra-meta:<tag>

(see `cobra-meta/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cobra-meta/README.html)