recipe cobra

COBRApy is a package for constraint-based modeling of biological networks.

Homepage

https://opencobra.github.io/cobrapy

License

GNU Lesser General Public License v2 or later (LGPLv2+) or GNU General Public License v2 or later (GPLv2+)

Recipe

/cobra/meta.yaml

package cobra

Versions

0.21.0-1,  0.21.0-0,  0.20.0-0,  0.19.0-0,  0.18.1-1,  0.18.1-0,  0.17.1-0,  0.17.0-0,  0.16.0-0, 

0.21.0-1,  0.21.0-0,  0.20.0-0,  0.19.0-0,  0.18.1-1,  0.18.1-0,  0.17.1-0,  0.17.0-0,  0.16.0-0,  0.15.4-0,  0.10.1-1,  0.10.1-0,  0.4.0-1,  0.4.0-0,  0.4.0b6-0

Depends

• appdirs >=1.4

• depinfo >=1.5.1

• diskcache >=5.0

• future

• httpx >=0.14

• numpy >=1.13

• optlang <1.4.6

• pandas >=1.0

• pydantic >=1.6

• python

• python-libsbml >=5.18.0

• rich >=6.0

• ruamel.yaml >=0.16

• six

• swiglpk >=4.65

• tabulate

Required By

• cameo

• escher

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cobra

and update with:

conda update cobra

or use the docker container:

docker pull quay.io/biocontainers/cobra:<tag>

(see cobra/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cobra/README.html)