recipe codoff

codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

Homepage:

https://github.com/Kalan-Lab/codoff

License:

BSD / BSD-3-Clause license

Recipe:

/codoff/meta.yaml

package codoff

(downloads) docker_codoff

versions:

1.1.8-0,  1.1.5-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-0

depends biopython:

depends matplotlib-base:

depends pyrodigal:

depends python:

>=3.10

depends scipy:

depends seaborn:

depends setuptools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install codoff

and update with::

   mamba update codoff

To create a new environment, run:

mamba create --name myenvname codoff

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/codoff:<tag>

(see `codoff/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/codoff/README.html)