recipe cogent

COmparative GENomics Toolkit



GNU General Public License (GPL)



package cogent

(downloads) docker_cogent



depends libgcc-ng:


depends matplotlib:


depends mpi4py:


depends mysql-python:


depends numpy:


depends python:


depends python_abi:

2.7.* *_cp27mu

depends sqlalchemy:


depends zlib:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cogent

and update with::

   mamba update cogent

To create a new environment, run:

mamba create --name myenvname cogent

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `cogent/tags`_ for valid values for ``<tag>``)

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