recipe cogent

COmparative GENomics Toolkit

Homepage

http://www.pycogent.org

License

GNU General Public License (GPL)

Recipe

/cogent/meta.yaml

package cogent

Versions

1.9-1, 1.9-0, 1.5.3-2, 1.5.3-1, 1.5.3-0

Depends

• libgcc-ng >=7.3.0

• matplotlib >=1.1.0

• mpi4py >=1.0

• mysql-python >=1.2.2

• numpy >=1.3

• python >=2.7,<2.8.0a0

• sqlalchemy >=0.5

• zlib >=1.2.11,<1.3.0a0

Required By

• qiime

• primerprospector

• pynast

• micropita

• probamconvert

• secapr

• picrust

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cogent

and update with:

conda update cogent

or use the docker container:

docker pull quay.io/biocontainers/cogent:<tag>

(see cogent/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cogent/README.html)