recipe cogent

COmparative GENomics Toolkit

Homepage:

http://www.pycogent.org

License:

GNU General Public License (GPL)

Recipe:

/cogent/meta.yaml

package cogent

versions:

1.9-4,  1.9-3,  1.9-2,  1.9-1,  1.9-0,  1.5.3-2,  1.5.3-1,  1.5.3-0

depends libgcc-ng:

>=10.3.0

depends matplotlib:

>=1.1.0

depends mpi4py:

>=1.0

depends mysql-python:

>=1.2.2

depends numpy:

>=1.3

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends sqlalchemy:

>=0.5

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cogent

and update with::

   mamba update cogent

To create a new environment, run:

mamba create --name myenvname cogent

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cogent:<tag>

(see `cogent/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cogent/README.html)