recipe coinfinder

A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

Homepage

https://github.com/fwhelan/coinfinder

License

GPL / GPL-3.0-only

Recipe

/coinfinder/meta.yaml

Links

doi: 10.1101/859371

package coinfinder

Versions

1.0.7-0,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-1, 

1.0.7-0,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.1-0,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-ggtree >=2.0.0,<2.1.0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• openmp

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-ape >=5.4.1

• r-base

• r-caper

• r-cowplot

• r-data.table

• r-dplyr >=1.0.2

• r-flock

• r-future

• r-getopt

• r-ggplot2 >=3.0.0

• r-ggraph

• r-igraph

• r-magrittr

• r-phytools >=0.6_99

• r-purrr

• r-rlang

• r-rvcheck

• r-tidyr >=1.1.2

• r-tidytree >=0.2.6

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install coinfinder

and update with:

conda update coinfinder

or use the docker container:

docker pull quay.io/biocontainers/coinfinder:<tag>

(see coinfinder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/coinfinder/README.html)