recipe concoct

Clustering cONtigs with COverage and ComposiTion

Homepage:

https://github.com/BinPro/CONCOCT

License:

BSD / FreeBSD

Recipe:

/concoct/meta.yaml

Links:

doi: 10.1038/nmeth.3103

package concoct

versions:

1.1.0-6,  1.1.0-5,  1.1.0-4,  1.1.0-3,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-5,  1.0.0-4, 

1.1.0-6,  1.1.0-5,  1.1.0-4,  1.1.0-3,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-5,  1.0.0-4,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.4.2-0,  0.4.1-0,  0.4.0-2,  0.4.0-1,  0.4.0-0

depends biopython:

>=1.62b

depends cython:

>=0.28.5

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends libopenblas:

* *openmp*

depends nose:

>=1.3.0

depends numpy:

>=1.19,<3

depends numpy:

>=2.0.0,<3.0a0

depends pandas:

>=0.11.0

depends python:

>=3.12,<3.13.0a0

depends python_abi:

3.12.* *_cp312

depends pytz:

>=2013.9

depends samtools:

depends scikit-learn:

>=1.1.3

depends scipy:

>=0.13.3

depends setuptools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install concoct

and update with::

   mamba update concoct

To create a new environment, run:

mamba create --name myenvname concoct

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/concoct:<tag>

(see `concoct/tags`_ for valid values for ``<tag>``)

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