recipe conduit-assembler

Long- and short-read hybrid de novo transcriptome assembly

Homepage:

https://github.com/NatPRoach/conduit

License:

GPL-2.0

Recipe:

/conduit-assembler/meta.yaml

package conduit-assembler

versions:

0.1.2-1,  0.1.2-0

depends bowtie2:

>=2.3.3

depends htslib:

>=1.12,<1.22.0a0

depends libgcc-ng:

>=9.3.0

depends samtools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install conduit-assembler

and update with::

   mamba update conduit-assembler

To create a new environment, run:

mamba create --name myenvname conduit-assembler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/conduit-assembler:<tag>

(see `conduit-assembler/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/conduit-assembler/README.html)