Package Recipe 'connectome-workbench'

recipe connectome-workbench

Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project

Homepage:: https://www.humanconnectome.org/software/connectome-workbench
Developer docs:: https://github.com/Washington-University/workbench
License:: GPL / GPL-2.0
Recipe:: /connectome-workbench/meta.yaml

package connectome-workbench¶

Versions:

1.3.2-0, 1.3.1-1, 1.3.1-0

Depends:

on freetype >=2.9.1,<3.0a0
on libgcc-ng >=4.9
on libglu
on libpng >=1.6.34,<1.7.0a0
on libstdcxx-ng >=4.9
on mesa
on openmp
on openssl >=1.0.2p,<1.0.3a
on qt >=5.9.6,<5.10.0a0
on xorg-libx11
on xorg-libxau
on xorg-libxcb
on xorg-libxdmcp
on xorg-libxext
on xorg-libxfixes
on zlib >=1.2.11,<1.3.0a0

Additional platforms:

Installation¶

You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).

Pixi¶

With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:

pixi global install connectome-workbench

to add into an existing workspace instead, run:

pixi add connectome-workbench

In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:

pixi workspace channel add conda-forge
pixi workspace channel add bioconda

Conda¶

With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:

conda install connectome-workbench

Alternatively, to install into a new environment, run:

conda create -n envname connectome-workbench

with envname being the name of the desired environment.

Container¶

Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:

docker pull quay.io/biocontainers/connectome-workbench:<tag>

(see connectome-workbench/tags for valid values for <tag>).

Integrated deployment¶

Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/connectome-workbench/README.html)