recipe conterminator

Conterminator: software to detect contamination in large sequence sets

Homepage:

https://github.com/martin-steinegger/conterminator

License:

GPL3

Recipe:

/conterminator/meta.yaml

Links:

doi: 10.1186/s13059-020-02023-1, biotools: conterminator

package conterminator

(downloads) docker_conterminator

versions:

1.c74b5-1,  1.c74b5-0

depends bzip2:

>=1.0.8,<2.0a0

depends gawk:

depends libgcc-ng:

>=9.3.0

depends libstdcxx-ng:

>=9.3.0

depends openmp:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install conterminator

and update with::

   mamba update conterminator

To create a new environment, run:

mamba create --name myenvname conterminator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/conterminator:<tag>

(see `conterminator/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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