- recipe coolbox
Jupyter notebook based genomic data visulization toolkit.
- Homepage:
- License:
GPL3
- Recipe:
- package coolbox¶
- versions:
0.3.8-0,0.3.7-1,0.3.7-0,0.3.6-0,0.3.5-0,0.3.4-0,0.3.3-0,0.3.1-0,0.3.0-0,0.3.8-0,0.3.7-1,0.3.7-0,0.3.6-0,0.3.5-0,0.3.4-0,0.3.3-0,0.3.1-0,0.3.0-0,0.2.2-0,0.2.1-0- depends cooler:
>=0.8.10- depends dna_features_viewer:
- depends fire:
- depends h5py:
- depends htslib:
- depends intervaltree:
- depends ipywidgets:
>=7.5.1- depends jupyter:
>=1.0.0- depends matplotlib-base:
>=3.1.1- depends nbformat:
- depends numpy:
- depends numpydoc:
- depends pairix:
- depends pandas:
>=1.0.0- depends pybbi:
- depends python:
>=3.7- depends samtools:
>=1.10- depends scipy:
>=1.0.0- depends statsmodels:
- depends svgutils:
- depends voila:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install coolbox and update with:: mamba update coolbox
To create a new environment, run:
mamba create --name myenvname coolbox
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/coolbox:<tag> (see `coolbox/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/coolbox/README.html)
