recipe cooler

Sparse binary format for genomic interaction matrices

Homepage:

https://github.com/open2c/cooler

License:

BSD / BSD-3-Clause

Recipe:

/cooler/meta.yaml

Links:

doi: 0.1093/bioinformatics/btz540

package cooler

Versions:

0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.11-2,  0.8.11-1,  0.8.11-0,  0.8.10-0,  0.8.9-0,  0.8.8-0, 

0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.11-2,  0.8.11-1,  0.8.11-0,  0.8.10-0,  0.8.9-0,  0.8.8-0,  0.8.7-0,  0.8.6-0,  0.8.5-0,  0.8.3-0,  0.8.2-1,  0.8.2-0,  0.8.1-0,  0.7.11-0,  0.7.10-1,  0.7.10-0,  0.7.9-0,  0.7.8-0,  0.7.7-0,  0.7.6-4,  0.7.6-3,  0.7.6-2,  0.7.6-1,  0.7.6-0,  0.7.4-0,  0.7.0-0

Depends:

• asciitree

• click >7

• cytoolz

• dask

• h5py >=2.5

• hdf5

• multiprocess

• numpy >=1.9

• pairix

• pandas >1.0

• pyfaidx

• pysam >0.8

• python

• pyyaml

• scipy

• simplejson

Required By:

• chromosight

• coolpuppy

• capcruncher

• pore-c

• coolbox

• hic2cool

• hint

• r-calder2

• basenji

• hicexplorer

• hicmatrix

• schicexplorer

• fanc

• cooltools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cooler

and update with:

conda update cooler

or use the docker container:

docker pull quay.io/biocontainers/cooler:<tag>

(see cooler/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cooler/README.html)