recipe cooler

Sparse binary format for genomic interaction matrices

Homepage

https://github.com/mirnylab/cooler

License

BSD

Recipe

/cooler/meta.yaml

package cooler

(downloads) docker_cooler

Versions

0.8.5-0, 0.8.3-0, 0.8.2-1, 0.8.2-0, 0.8.1-0, 0.7.11-0, 0.7.10-1, 0.7.10-0, 0.7.9-0, 0.7.8-0, 0.7.7-0, 0.7.6-3, 0.7.6-2, 0.7.6-1, 0.7.6-0, 0.7.4-0, 0.7.0-0

Depends asciitree

Depends biopython

Depends click

Depends cytoolz

Depends dask

Depends h5py

Depends hdf5

Depends multiprocess

Depends numpy

Depends pairix

Depends pandas

Depends pyfaidx

Depends pysam

>0.8

Depends python

>=2.7,<2.8.0a0

Depends pyyaml

Depends scipy

Depends six

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cooler

and update with:

conda update cooler

or use the docker container:

docker pull quay.io/biocontainers/cooler:<tag>

(see cooler/tags for valid values for <tag>)