recipe cooler

Sparse binary format for genomic interaction matrices

Homepage

https://github.com/mirnylab/cooler

License

BSD

Recipe

/cooler/meta.yaml

package cooler

Versions

0.8.3-0, 0.8.2-1, 0.8.2-0, 0.8.1-0, 0.7.11-0, 0.7.10-1, 0.7.10-0, 0.7.9-0, 0.7.8-0, 0.7.7-0, 0.7.6-3, 0.7.6-2, 0.7.6-1, 0.7.6-0, 0.7.4-0, 0.7.0-0

Depends

• asciitree

• biopython

• click

• cytoolz

• dask

• h5py

• hdf5

• multiprocess

• numpy

• pairix

• pandas

• pyfaidx

• pysam >0.8

• python >=2.7,<2.8.0a0

• pyyaml

• scipy

• six

• zlib >=1.2.11,<1.3.0a0

Required By

• hicexplorer

• hicmatrix

• hic2cool

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cooler

and update with:

conda update cooler

or use the docker container:

docker pull quay.io/biocontainers/cooler:<tag>

(see cooler/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cooler/README.html)