- recipe coot-headless
Coot Headless API - Software for macromolecular model building.
- Homepage:
- Documentation:
https://www.mrc-lmb.cam.ac.uk/lucrezia/libcootapi-documentation/index.html
- Developer docs:
- License:
GPL3 / GPL-3.0-or-later AND LGPL-3.0-or-later
- Recipe:
- Links:
Coot is a macromolecular model building, model completion and validation application. This package provides the headless APIs (Chapi python bindings and libcootapi C++ library) without GUI dependencies, suitable for automated workflows.
- package coot-headless¶
- versions:
1.1.17-2,1.1.17-1,1.1.17-0- depends cairo:
>=1.18.4,<2.0a0- depends clipper:
>=2.1.20180802,<3.0a0- depends curl:
- depends elfutils:
>=0.191,<0.192.0a0- depends fontconfig:
>=2.15.0,<3.0a0- depends fonts-conda-ecosystem:
- depends gemmi:
>=0.7.3,<1.0a0- depends gsl:
>=2.7,<2.8.0a0- depends libboost:
>=1.86.0,<1.87.0a0- depends libboost-python:
>=1.86.0,<1.87.0a0- depends libccp4:
>=8.0.0,<9.0a0- depends libffi:
>=3.4.6,<3.5.0a0- depends libfreetype:
>=2.13.3- depends libfreetype6:
>=2.13.3- depends libgcc:
>=13- depends libopenblas:
- depends libpng:
>=1.6.50,<1.7.0a0- depends librdkit-dev:
>=2024.9.5,<2025.0a0- depends libsqlite:
>=3.50.2,<4.0a0- depends libstdcxx:
>=13- depends libxml2:
>=2.13.8,<2.14.0a0- depends libzlib:
>=1.3.1,<2.0a0- depends mmdb2:
>=2.0.22,<3.0a0- depends numpy:
>=1.26.4,<2.0a0- depends pixman:
>=0.46.2,<1.0a0- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends rdkit:
>=2024.9.5,<2025.0a0- depends ssm:
>=1.4,<2.0a0- requirements:
- additional platforms:
linux-aarch64,osx-arm64
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install coot-headless and update with:: mamba update coot-headless
To create a new environment, run:
mamba create --name myenvname coot-headless
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/coot-headless:<tag> (see `coot-headless/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/coot-headless/README.html)
