recipe coptr

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.

Homepage:

https://github.com/tyjo/coptr

License:

GPL3 / GPL-3.0-or-later

Recipe:

/coptr/meta.yaml

package coptr

versions:

1.1.4-3,  1.1.4-2,  1.1.4-1,  1.1.4-0

depends bowtie2:

>=2.4.1

depends matplotlib-base:

>=3.3.2

depends numpy:

>=1.19.1,<=1.24.4

depends pysam:

>=0.16.0.1

depends python:

>=3.7,<=3.8

depends scipy:

>=1.5.2,<2.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install coptr

and update with::

   mamba update coptr

To create a new environment, run:

mamba create --name myenvname coptr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/coptr:<tag>

(see `coptr/tags`_ for valid values for ``<tag>``)

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