recipe cortex_con

cortex_con (primary contact Mario Caccamo) is for consensus genome assembly

Homepage:

http://cortexassembler.sourceforge.net/index.html

License:

GPL3

Recipe:

/cortex_con/meta.yaml

Links:

biotools: cortex, doi: 10.1038/ng.1028

package cortex_con

(downloads) docker_cortex_con

versions:

0.04c-1,  0.04c-0

depends libgcc-ng:

>=4.9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cortex_con

and update with::

   mamba update cortex_con

To create a new environment, run:

mamba create --name myenvname cortex_con

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cortex_con:<tag>

(see `cortex_con/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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