recipe cortexpy

A Python API for manipulating (Mc)Cortex de novo assembly graph and link data




APACHE / Apache Software



package cortexpy

(downloads) docker_cortexpy



depends attrs:

depends biopython:

depends delegation:

depends libgcc-ng:


depends libstdcxx-ng:


depends msgpack-python:

depends networkx:

depends numpy:

depends python:


depends python_abi:

3.8.* *_cp38

depends pyyaml:

depends schema:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cortexpy

and update with::

   mamba update cortexpy

To create a new environment, run:

mamba create --name myenvname cortexpy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `cortexpy/tags`_ for valid values for ``<tag>``)

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