recipe cortexpy

A Python API for manipulating (Mc)Cortex de novo assembly graph and link data

Homepage

https://github.com/winni2k/cortexpy

Documentation

https://cortexpy.readthedocs.io/en/v0.46.5/

License

APACHE / Apache Software

Recipe

/cortexpy/meta.yaml

package cortexpy

Versions

0.46.5-1,  0.46.5-0,  0.46.4-0,  0.45.7-0,  0.45.6-0,  0.44.0-0,  0.41.1-0

Depends

• attrs

• biopython

• delegation

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• msgpack-python

• networkx

• numpy

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• pyyaml

• schema

Required By

• abeona

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cortexpy

and update with:

conda update cortexpy

or use the docker container:

docker pull quay.io/biocontainers/cortexpy:<tag>

(see cortexpy/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cortexpy/README.html)