recipe cpc2

Coding Potential Calculator 2 (CPC2)

Homepage:

https://github.com/gao-lab/CPC2_standalone

License:

MIT

Recipe:

/cpc2/meta.yaml

CPC2 a fast and accurate coding potential calculator based on sequence intrinsic features.

package cpc2

(downloads) docker_cpc2

versions:

1.0.1-0

depends biopython:

depends libsvm:

depends python:

depends six:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cpc2

and update with::

   mamba update cpc2

To create a new environment, run:

mamba create --name myenvname cpc2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cpc2:<tag>

(see `cpc2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cpc2/README.html)