recipe crispector

Accurate estimation of off-target editing activity from comparative NGS data

Homepage:

https://github.com/YakhiniGroup/crispector

License:

free to academic and non-for-profit research work, non-commercial use, see LICENSE file

Recipe:

/crispector/meta.yaml

package crispector

versions:

1.0.7-0,  1.0.4-0,  1.0.3-0,  1.0.2b9-0,  1.0.2b7-0,  1.0.2b6-0

depends biopython:

>=1.74

depends click:

>=7.0

depends fastp:

depends jinja2:

depends matplotlib-base:

>=3.1.2

depends mpmath:

>=1.3.0

depends numpy:

>=1.12.1

depends pandas:

>=0.24.2

depends plotly:

>=4.3.0

depends python:

3.7.*

depends python-edlib:

depends pyyaml:

>=5.1.2

depends scipy:

>=1.2.1

depends seaborn:

>=0.9.0

depends statsmodels:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crispector

and update with::

   mamba update crispector

To create a new environment, run:

mamba create --name myenvname crispector

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crispector:<tag>

(see `crispector/tags`_ for valid values for ``<tag>``)

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