recipe crisprbact

Tools to design and analyse CRISPRi experiments

Homepage:

https://gitlab.pasteur.fr/dbikard/crisprbact

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/crisprbact/meta.yaml

package crisprbact

versions:

0.3.11-0,  0.3.10-0,  0.3.9-0,  0.3.8-0,  0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-0, 

0.3.11-0,  0.3.10-0,  0.3.9-0,  0.3.8-0,  0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.1.0-0

depends biopython:

>=1.75,<2.0

depends click:

>=7.0,<8.0

depends numpy:

>=1.17,<2.0

depends pandas:

>=0.25.3

depends poetry:

depends python:

>=3.7

depends rope:

>=0.16.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crisprbact

and update with::

   mamba update crisprbact

To create a new environment, run:

mamba create --name myenvname crisprbact

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crisprbact:<tag>

(see `crisprbact/tags`_ for valid values for ``<tag>``)

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Link to this page

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