recipe crispritz

CRISPRitz, tool package for CRISPR experiments assessment and analysis.

Homepage:

https://github.com/pinellolab/CRISPRitz

License:

GPL3

Recipe:

/crispritz/meta.yaml

package crispritz

versions:

2.6.6-2,  2.6.6-1,  2.6.6-0,  2.6.5-1,  2.6.5-0,  2.6.4-0,  2.6.3-1,  2.6.3-0,  2.6.2-0, 

2.6.6-2,  2.6.6-1,  2.6.6-0,  2.6.5-1,  2.6.5-0,  2.6.4-0,  2.6.3-1,  2.6.3-0,  2.6.2-0,  2.6.1-0,  2.6.0-0,  2.5.9-0,  2.5.8-0,  2.5.7-1,  2.5.7-0,  2.5.6-0,  2.5.5-0,  2.5.4-0,  2.5.3-1,  2.5.3-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.9-0,  2.4.8-0,  2.4.7-0,  2.4.6-0,  2.4.3-0,  2.4.2-0,  2.4.1-0,  2.3.8-0,  2.3.7-1,  2.3.7-0,  2.3.6-2,  2.3.6-1,  2.3.6-0,  2.3.5-0,  2.3.4-0,  2.3.3-0,  2.3.2-1,  2.3.2-0,  2.3.1-1,  2.3.1-0,  2.2.0-0,  2.1.1-0,  2.1.0-0,  1.2.1-0,  1.2.0-0,  1.1.1-1,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.5-0,  1.0.3-0

depends _openmp_mutex:

>=4.5

depends bcftools:

depends bedops:

depends bedtools:

depends biopython:

depends boost-cpp:

depends htslib:

depends intervaltree:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends matplotlib-base:

depends more-itertools:

depends numpy:

depends openmp:

depends pandas:

depends python:

>=3.8,<3.9.0a0

depends python_abi:

3.8.* *_cp38

depends rename:

depends scikit-learn:

0.23.2.*

depends scipy:

depends statsmodels:

depends tk:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crispritz

and update with::

   mamba update crispritz

To create a new environment, run:

mamba create --name myenvname crispritz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crispritz:<tag>

(see `crispritz/tags`_ for valid values for ``<tag>``)

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