recipe crisprme

CRISPRme, tool package for CRISPR experiments assessment and analysis.

Homepage:

https://github.com/pinellolab/CRISPRme

Documentation:

https://github.com/pinellolab/CRISPRme/blob/v2.1.6/README.md

License:

AGPL / AGPL-3.0-or-later

Recipe:

/crisprme/meta.yaml

Links:

doi: 10.1038/s41588-022-01257-y

package crisprme

(downloads) docker_crisprme

versions:
2.1.6-0,  2.1.5-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.9-0,  2.0.8-0, 

2.1.6-0,  2.1.5-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.9-0,  2.0.8-0,  2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0.0-2,  2.0.0-1,  2.0.0-0,  1.9.9-1,  1.9.9-0,  1.9.8-0,  1.9.7-0,  1.9.6-0,  1.9.5-0,  1.9.4-2,  1.9.4-1,  1.9.4-0,  1.9.3-1,  1.9.3-0,  1.9.2-0,  1.9.1-0,  1.9.0-0,  1.8.8-0,  1.8.7-0,  1.8.6-0,  1.8.3-0,  1.8.2-0,  1.8.1-0,  1.8.0-0,  1.7.9-1,  1.7.9-0,  1.7.7-0,  1.7.2-0,  1.7.0-0,  1.6.8-0,  1.6.7-0,  1.6.6-0,  1.6.5-1,  1.6.5-0,  1.6.4-1,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6.0-1,  1.6.0-0,  1.5.8-0,  1.5.6-0,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.1-0,  1.5.0-1,  1.5.0-0,  1.4.9-0,  1.4.8-0,  1.4.7-0,  1.4.6-0,  1.4.5-0,  1.4.3-1,  1.4.3-0,  1.4.2-0,  1.4.1-0,  1.4.0-0,  1.3.9-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.2-0,  1.2.0-0,  1.1.0-0,  1.0.9-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0

depends axel:

depends crispritz:

depends dash:

1.10.0.*

depends dash-bootstrap-components:

0.10.0.*

depends dash-core-components:

1.9.0.*

depends dash-daq:

0.4.0.*

depends dash-html-components:

1.0.3.*

depends dash-renderer:

1.3.0.*

depends dash-table:

4.6.2.*

depends flask:

1.1.3.*

depends flask-caching:

1.7.1.*

depends flask-compress:

1.5.0.*

depends fontconfig:

2.13.1.*

depends freetype:

2.10.1.*

depends future:

0.18.2.*

depends gdown:

depends gettext:

0.19.8.1.*

depends gunicorn:

20.0.4.*

depends itsdangerous:

>=0.24,<2.0

depends numpy:

1.20.0.*

depends pandas:

1.2.5.*

depends werkzeug:

1.0.1.*

depends zip:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crisprme

and update with::

   mamba update crisprme

To create a new environment, run:

mamba create --name myenvname crisprme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crisprme:<tag>

(see `crisprme/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crisprme/README.html)