recipe croo

CRomwell Output Organizer

Homepage:

https://github.com/ENCODE-DCC/croo

License:

MIT

Recipe:

/croo/meta.yaml

This program parses metadata JSON file generated from Cromwell and organizes its raw outputs

package croo

versions:

0.6.0-0,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.2.1-0,  0.3.4-0,  0.3.3-0,  0.3.1-0, 

0.6.0-0,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.2.1-0,  0.3.4-0,  0.3.3-0,  0.3.1-0,  0.2.1-0,  0.2.0-0,  0.1.8-0

depends autouri:

>=0.1.2.1

depends caper:

depends graphviz:

depends miniwdl:

depends python:

>=3.6

depends python-graphviz:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install croo

and update with::

   mamba update croo

To create a new environment, run:

mamba create --name myenvname croo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/croo:<tag>

(see `croo/tags`_ for valid values for ``<tag>``)

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