recipe crypto_typer

This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers.



Apache License, Version 2.0



package crypto_typer

(downloads) docker_crypto_typer



depends biopython:


depends blast:


depends numpy:


depends python:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crypto_typer

and update with::

   mamba update crypto_typer

To create a new environment, run:

mamba create --name myenvname crypto_typer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `crypto_typer/tags`_ for valid values for ``<tag>``)

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