recipe ctat-mutations

Mutation detection in RNA-Seq using GATK-v4.0 in RNA-Seq variant calling, several sources of variant annotation, and filtering based on CRAVAT.

Homepage

https://github.com/NCIP/ctat-mutations

License

BSD-3-Clause

Recipe

/ctat-mutations/meta.yaml

package ctat-mutations

(downloads) docker_ctat-mutations

Versions

2.1.0-0, 2.0.1-5, 2.0.1-4, 2.0.1-3, 2.0.1-2, 2.0.1-1, 2.0.1-0, 2.0.0-4, 2.0.0-3, 2.0.0-0, 1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ctat-mutations

and update with:

conda update ctat-mutations

or use the docker container:

docker pull quay.io/biocontainers/ctat-mutations:<tag>

(see ctat-mutations/tags for valid values for <tag>)