recipe ctseq

ctSeq is a pipeline to analyze methylation patch PCR data

Homepage:

https://github.com/ryanhmiller/ctseq

License:

MIT / MIT

Recipe:

/ctseq/meta.yaml

package ctseq

Versions:

0.0.2-0

Depends:

• bismark

• cutadapt

• ncurses 6.1 he6710b0_1

• numpy

• openssl 1.0.2p h14c3975_1002

• python >=3.7

• r-base 3.5.1.*

• r-ggplot2

• r-pheatmap

• r-reshape

• samtools 1.9.*

• simplesam 0.1.3.1.*

• umi_tools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ctseq

and update with:

conda update ctseq

or use the docker container:

docker pull quay.io/biocontainers/ctseq:<tag>

(see ctseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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