recipe ctxcore

Core functions for pycisTarget and the SCENIC tool suite.

Homepage:

https://scenic.aertslab.org

Documentation:

https://ctxcore.readthedocs.io/en/latest

Developer docs:

https://github.com/aertslab/ctxcore

License:

GPL3 / GPL-3.0-or-later

Recipe:

/ctxcore/meta.yaml

package ctxcore

(downloads) docker_ctxcore

versions:

0.2.0-0

depends cytoolz:

depends frozendict:

depends numba:

>=0.51.2

depends numpy:

depends pandas:

>=0.24

depends pyarrow:

>=8.0.0

depends python:

depends pyyaml:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ctxcore

and update with::

   mamba update ctxcore

To create a new environment, run:

mamba create --name myenvname ctxcore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ctxcore:<tag>

(see `ctxcore/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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